SpliceMiner | Tool name | SpliceMiner |
|---|
| URL | http://projects.insilico.us/SpliceMiner/intro.jsp |
|---|
| Important features | SpliceMiner is a tool for querying Evidence Viewer Database (EVDB). SpliceMiner supports high-throughput batch queries and provides results in an easily parsable format. |
|---|
| Citations | Kahn AB, Ryan MC, Liu H, Zeeberg BR, Jamison DC, Weinstein JN. SpliceMiner: a
high-throughput database implementation of the NCBI EvIDence Viewer for
microarray splice variant analysis. BMC Bioinformatics. 2007 Mar 5;8:75. PubMed
PMID: 17338820; PubMed Central PMCID: PMC1839109.
|
|---|
| Year of publication | 2007 |
|---|
| Rank by usage frequency | 100 |
|---|
| Comments | 1) Gene information includes chromosome number, start and end position, strand information. 2) Probe information includes Probe position. |
|---|
| Function | Exon detail, Exon detail: number, Exon detail: start/end, Exon detail indirect information, Graphical display of transcripts, Gene Information, Probe set details, Species, Finds alternative splicing in human, Finds alternative splicing in rat, Finds alternative splicing in mouse, Finds alternative splicing in Arabidopsis, Finds alternative splicing in Drosophila, Finds alternative splicing in other species |
|---|
| Category | |
|---|
| Input file format | Organism,gene symbol/genomic position,DNA/RNA probe sequence,protein sequence or by selecting the type of batches(DNA/RNA probe sequence,protein sequences,gene,chromosome position), by pasting or uploading the batch queries (Batch-request files can be pasted into the SpliceMiner text area or uploaded in text or zip file form), |
|---|
| Output file format | |
|---|
| Limitation | |
|---|
| |
